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 | NeoBio API | ||||||||
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| neobio.alignment.* | 
| neobio.alignment.CharSequence | ||
| protected static final char | COMMENT_CHAR | 62 | 
| neobio.alignment.CrochemoreLandauZivUkelson | ||
| protected static final byte | DIAGONAL_DIRECTION | 2 | 
| protected static final byte | LEFT_DIRECTION | 1 | 
| protected static final byte | STOP_DIRECTION | 0 | 
| protected static final byte | TOP_DIRECTION | 3 | 
| neobio.alignment.CrochemoreLandauZivUkelsonLocalAlignment | ||
| protected static final byte | TYPE_C_PATH | 2 | 
| protected static final byte | TYPE_CROSSING_PATH | 0 | 
| protected static final byte | TYPE_E_PATH | 3 | 
| protected static final byte | TYPE_S_PATH | 1 | 
| neobio.alignment.FactorSequence | ||
| protected static final char | COMMENT_CHAR | 62 | 
| neobio.alignment.PairwiseAlignmentAlgorithm | ||
| protected static final char | APPROXIMATE_MATCH_TAG | 43 | 
| protected static final char | GAP_CHARACTER | 45 | 
| protected static final char | GAP_TAG | 32 | 
| protected static final char | MATCH_TAG | 124 | 
| protected static final char | MISMATCH_TAG | 32 | 
| neobio.alignment.ScoringMatrix | ||
| protected static final char | COMMENT_CHAR | 35 | 
| protected static final char | INDEL_CHAR | 42 | 
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